PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098795.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 403aa    MW: 44486.1 Da    PI: 6.0785
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.7e-1080101526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++ rtGtCk+G +C+++H+
  XP_011098795.1  80 DCPHYVRTGTCKFGLNCRYNHP 101
                     5********************9 PP

2zf-CCCH22.32.3e-07120144226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +t +C++f+  G CkyG +C++ H+
  XP_011098795.1 120 GTIECKYFSTAGGCKYGKSCRYGHP 144
                     7889******************886 PP

3zf-CCCH33.56.9e-11166190327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C++++r+G C yG+rC ++H++
  XP_011098795.1 166 EKECPYYMRNGSCGYGSRCVYHHPE 190
                     689********************96 PP

4zf-CCCH34.34e-11305331127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++tG Ck+ ++C+F+H++
  XP_011098795.1 305 PGQPECDYFMKTGDCKFRSTCRFHHPK 331
                     5789*********************96 PP

5zf-CCCH26.21.4e-08351376126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++Cr++ r G Ck+G  C F H+
  XP_011098795.1 351 PGRSICRHYERHGLCKFGRACLFDHP 376
                     6899*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.52675103IPR000571Zinc finger, CCCH-type
SMARTSM003560.009675102IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-880101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-580105IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61118146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5119147IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-5119144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6162191IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666163191IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8166190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4169189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619304332IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4304331IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-7306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5308333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629350378IPR000571Zinc finger, CCCH-type
SMARTSM003560.012350377IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-6351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5353377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MTTYEDDSQT KPCPDAETEE QEPGFLTPAP LSEDALIERM ESVALKSEDN NDSIVDDDGN  60
KDVAGCENSG LLPLRPYAGD CPHYVRTGTC KFGLNCRYNH PVKKTQQFLK SRDSDSDNFG  120
TIECKYFSTA GGCKYGKSCR YGHPGEESEN TVPELNFLGL PMRLGEKECP YYMRNGSCGY  180
GSRCVYHHPE PTSVAGKRSP NGMDEKFGEP VVSLAENSSV GSLHLSGASK PYQAPWSSHK  240
SSHSVGPYSE NQSSPQWIGE QSEHNGPQGS NYSHQGRNSC TAPTANGCVR KMDGSMQVDE  300
FPERPGQPEC DYFMKTGDCK FRSTCRFHHP KNRTPKVEEC ILNENGLPLR PGRSICRHYE  360
RHGLCKFGRA CLFDHPATHG LPAYPEWPTS GSAVGCDGSG WDY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098795.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A022S0R21e-166A0A022S0R2_ERYGU; Uncharacterized protein
STRINGVIT_14s0219g00170.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1640855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-86C3H family protein